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Research

CO2calc—a User-Friendly Seawater-Carbon Calculator for Windows, Mac OS X, and iOS (iPhone)óWill Assist Studies of Ocean Chemistry



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Opening page on the CO2calc iPhone app
Above: Opening page on the CO2calc iPhone app.

CO2calc display for entering data.
Above: CO2calc display for entering data. [larger version]

CO2calc display for selecting constants.
Above: CO2calc display for selecting constants. [larger version]

CO2calc display for displaying results.
Above: CO2calc display for displaying results. [larger version]

Research findings of the past decade have led to mounting concern that rising atmospheric carbon dioxide (CO2) concentrations will cause changes in the ocean's carbonate chemistry system, and that those changes will affect some of the most fundamental biological and geochemical processes of the sea.
—Impacts of Ocean Acidification on Coral Reefs and Other Marine Calcifiers (http://www.ucar.edu/news/releases/2006/report.shtml)

Currently, the ocean absorbs about 30 percent of the carbon dioxide (CO2) released to the atmosphere by fossil-fuel combustion. As the atmospheric concentration of CO2 rises, so does absorption of CO2 by the ocean, causing chemical changes that include a decrease in seawater pH. This "ocean acidification" reduces the availability of carbonate ions (CO32-) required for building the shells and skeletons of calcifying marine organisms. Such changes, which could have far-reaching effects, have intensified researchers' interest in the study of seawater carbon—particularly CO2 and other forms of inorganic carbon—and the need for tools to gather and manage increasing amounts of chemical data.

Since the late 1990s, those who conduct research on the chemical behavior of inorganic carbon in seawater have had several software packages for calculating CO2-system chemistry. Ernie Lewis of the Brookhaven National Laboratory and Doug Wallace of the Leibniz Institute of Marine Sciences at Kiel University (Germany) first undertook the monumental effort of sorting through the original literature and equations to produce CO2SYS, a Windows-based program that has been an invaluable and well-documented service to the research community (see http://cdiac.ornl.gov/oceans/co2rprt.html). The equations and documentation of CO2SYS have since been adapted for use within Microsoft Excel and coded for use within such programming languages as MatLab and "R" (for example, see http://CRAN.R-project.org/package=seacarb). These programs are not particularly user friendly, however, and in some cases require users to have a fair amount of skill in a computer language.

While walking with our iPhones at the Ocean Carbon Biogeochemistry Short Course on Ocean Acidification in November 2009, we decided that an iPhone application (app) for CO2SYS would be a valuable tool for many researchers, particularly for new students in the field. Development of this app would also enable the more rapid analysis of carbon data from two USGS projects: the Response of Florida Shelf Ecosystems to Climate Change project and the new Arctic Ocean Acidification project.

With the excellent programming skills of Mark Hansen (USGS, St. Petersburg, Florida) and Stephan Meylan (Jacobs Technology, contracted to the USGS), we developed CO2calc, an easy-to-use CO2-system calculator designed for anyone with a PC, Mac, or iPhone. The app is described in USGS Open-File Report 2010-1280.

Like the other calculators, CO2calc is based largely on CO2SYS, but it incorporates several new developments in CO2-system calculations, including options to use the dissociation constants of Tim Lueker and others (http://dx.doi.org/10.1016/S0304-4203(00)00022-0), as well as the constants of Frank Millero (http://dx.doi.org/10.1071/MF09254), which are a better fit for estuarine waters. An entirely new feature is the option to calculate air-sea CO2 fluxes according to the gas-transfer-velocity formulations of Rik Wanninkhof (http://dx.doi.org/10.1029/92JC00188), Philip Nightingale and others (http://dx.doi.org/10.1029/1999GB900091), and David Ho and others (http://dx.doi.org/10.1029/2006GL026817). This last feature has enabled a rapid, more comprehensive approach to analyzing USGS CO2 flux data from the west Florida shelf and the Arctic. Currently, USGS scientists and collaborators are using the app to develop carbon budgets in the Gulf of Mexico.

CO2calc has an intuitively designed graphical user interface for choosing constants, entering data, and displaying results. It also includes many additional features, such as the capability of tagging data with date, time, latitude/longitude (all of which can be automatically retrieved on iPhone 3, 3GS, 4, and Windows hosts that have an NMEA [National Marine Electronics Association]-enabled GPS), as well as sample name and comments. It also allows batch-file processing, as well as an option to save sample information, data input, and calculated results as a comma-separated value (CSV) file for use with Microsoft Excel, ArcGIS, or other applications. Finally, it includes an option to export points with geographic coordinates as a KMZ file for viewing and editing in Google Earth. CO2calc documentation is provided as a PDF file, which on the iPhone version is organized into separate tab-based folders. CO2calc versions for Mac, PC, and iPhone can be downloaded from the USGS Web site at http://pubs.usgs.gov/of/2010/1280/ and from the Carbon Dioxide Information Analysis Center (CDIAC) Web site at http://cdiac.ornl.gov/oceans/datmet.html, which offers the other CO2-system calculation programs as well. The iPhone version is also available for free in the Education section of the iTunes App store.

An important lesson learned during the development of CO2calc is that the small format of the iPhone forced the design of the interface to be simple and intuitive, so much so that the format was adapted for the PC and Mac interfaces. This new application is not only novel but also very handy for both inexperienced and experienced researchers. Since the launch of CO2calc in mid-December, we have received positive feedback from educators and scientists in many countries who are or will be using it in their classes and research.  Statistics from the USGS publication site and iPhone App store indicate that researchers in more than 17 countries have already downloaded this app, either for Mac, PC, or iPhone.

Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

Note: A similar version of this article, with a complete list of technical references, was published in the January 2011 issue of SOLAS News, http://www.solas-int.org/news/newsletter/newsletter.html.


Related Sound Waves Stories
Coral Calcification Rates in South Florida During Times of Changing Ocean Conditions
Oct. / Nov. 2010
Ocean Acidification: Research on Top of the World
Aug. / Sept. 2010

Related Web Sites
CO2calc: A User-Friendly Seawater Carbon Calculator for Windows, Mac OS X, and iOS (iPhone)
USGS
Response of Florida Shelf Ecosystems to Climate Change
USGS
Ocean Acidification - The Arctic
USGS
Impacts of Ocean Acidification on Coral Reefs and Other Marine Calcifiers
NSF, NOAA, USGS
Program Developed for CO2 System Calculations
CDIAC
SOLAS Newsletter
SOLAS

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Research
cover story:
Powerful Earthquake, Devastating Tsunami in Japan

Gulf of Mexico's Deep-Water Coral

Analyzing Sea Otter Death Data

CO2calc—a User-Friendly Seawater-Carbon Calculator

Outreach USGS Drifter Comes Ashore 40 Years After Release

Linking Marine Aquariums to Marine Research and Conservation

Boston University Students Visit Woods Hole

Meetings South Bay Science Symposium

Staff and Center News Intern from Sweden Assisting USGS Staff in Florida

Publications Online Guide for Diatoms

March 2011 Publications


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